recipe bioconductor-scgps

A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

Homepage

https://bioconductor.org/packages/3.11/bioc/html/scGPS.html

License

GPL-3

Recipe

/bioconductor-scgps/meta.yaml

The package implements two main algorithms to answer two key questions: a SCORE (Stable Clustering at Optimal REsolution) to find subpopulations, followed by scGPS to investigate the relationships between subpopulations.

package bioconductor-scgps

(downloads) docker_bioconductor-scgps

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scgps

and update with:

conda update bioconductor-scgps

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scgps:<tag>

(see bioconductor-scgps/tags for valid values for <tag>)