recipe bioconductor-schex

Hexbin plots for single cell omics data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/schex.html

License

GPL-3

Recipe

/bioconductor-schex/meta.yaml

Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment and SeuratObject. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.

package bioconductor-schex

Versions

1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-singlecellexperiment >=1.12.0,<1.13.0

• r-base >=4.0,<4.1.0a0

• r-cluster

• r-concaveman

• r-dplyr

• r-entropy

• r-ggforce

• r-ggplot2 >=3.2.1

• r-hexbin

• r-scales

• r-seurat

• r-shiny

Required By

• bioconductor-sctgif

• bioconductor-sctensor

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-schex

and update with:

conda update bioconductor-schex

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-schex:<tag>

(see bioconductor-schex/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-schex/README.html)