recipe bioconductor-scoreinvhap

Get inversion status in predefined regions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scoreInvHap.html

License:

file LICENSE

Recipe:

/bioconductor-scoreinvhap/meta.yaml

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.

package bioconductor-scoreinvhap

(downloads) docker_bioconductor-scoreinvhap

Versions:

1.20.0-01.16.0-01.14.0-01.12.1-01.12.0-01.10.0-01.8.0-01.6.0-11.4.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scoreinvhap

and update with:

conda update bioconductor-scoreinvhap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scoreinvhap:<tag>

(see bioconductor-scoreinvhap/tags for valid values for <tag>)

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