recipe bioconductor-scoreinvhap

Get inversion status in predefined regions

Homepage

https://bioconductor.org/packages/3.12/bioc/html/scoreInvHap.html

License

file LICENSE

Recipe

/bioconductor-scoreinvhap/meta.yaml

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.

package bioconductor-scoreinvhap

(downloads) docker_bioconductor-scoreinvhap

Versions

1.12.0-01.10.0-01.8.0-01.6.0-11.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scoreinvhap

and update with:

conda update bioconductor-scoreinvhap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scoreinvhap:<tag>

(see bioconductor-scoreinvhap/tags for valid values for <tag>)