- recipe bioconductor-scoreinvhap
Get inversion status in predefined regions
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scoreInvHap.html
- License:
file LICENSE
- Recipe:
scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.
- package bioconductor-scoreinvhap¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.14.0-0
,1.12.1-0
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-snpstats
>=1.48.0,<1.49.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scoreinvhap
and update with:
conda update bioconductor-scoreinvhap
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scoreinvhap:<tag>
(see bioconductor-scoreinvhap/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scoreinvhap/README.html)