recipe bioconductor-scp

Mass Spectrometry-Based Single-Cell Proteomics Data Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scp.html

License:

Artistic-2.0

Recipe:

/bioconductor-scp/meta.yaml

Utility functions for manipulating, processing, and analyzing mass spectrometry-based single-cell proteomics data. The package is an extension to the 'QFeatures' package and relies on 'SingleCellExpirement' to enable single-cell proteomics analyses. The package offers the user the functionality to process quantitative table (as generated by MaxQuant, Proteome Discoverer, and more) into data tables ready for downstream analysis and data visualization.

package bioconductor-scp

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-mscoreutils >=1.10.0,<1.11.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-qfeatures >=1.8.0,<1.9.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-magrittr

• r-matrixstats

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scp

and update with:

conda update bioconductor-scp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scp:<tag>

(see bioconductor-scp/tags for valid values for <tag>)

Download stats

Link to this page

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