recipe bioconductor-scpipe

pipeline for single cell RNA-seq data analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/scPipe.html

License:

GPL (>= 2)

Recipe:

/bioconductor-scpipe/meta.yaml

A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

package bioconductor-scpipe

(downloads) docker_bioconductor-scpipe

Versions:
1.16.0-11.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.1-0

1.16.0-11.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.1-01.4.0-01.2.1-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scpipe

and update with:

conda update bioconductor-scpipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scpipe:<tag>

(see bioconductor-scpipe/tags for valid values for <tag>)

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