bioconductor-scran

downloads

Implements a variety of low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, and detection of highly variable and significantly correlated genes.

Home http://bioconductor.org/packages/3.6/bioc/html/scran.html
Versions 1.4.5, 1.6.2
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-scran

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scran

and update with:

conda update bioconductor-scran

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-scran.