recipe bioconductor-scran

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, correction of batch effects, identification of marker genes, and other common tasks in single-cell analysis workflows.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/scran.html

License

GPL-3

Recipe

/bioconductor-scran/meta.yaml

Links

biotools: scran

package bioconductor-scran

(downloads) docker_bioconductor-scran

Versions

1.12.1-0, 1.10.1-0, 1.8.4-0, 1.6.2-0, 1.4.5-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scran

and update with:

conda update bioconductor-scran

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scran:<tag>

(see bioconductor-scran/tags for valid values for <tag>)