recipe bioconductor-sechm

sechm: Complex Heatmaps from a SummarizedExperiment

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/sechm.html

License:

GPL-3

Recipe:

/bioconductor-sechm/meta.yaml

sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.

package bioconductor-sechm

versions:

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-complexheatmap:

>=2.18.0,<2.19.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-circlize:

depends r-matrixstats:

depends r-randomcolor:

depends r-seriation:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-sechm

and update with::

   mamba update bioconductor-sechm

To create a new environment, run:

mamba create --name myenvname bioconductor-sechm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-sechm:<tag>

(see `bioconductor-sechm/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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