recipe bioconductor-sechm

sechm: Complex Heatmaps from a SummarizedExperiment

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/sechm.html

License:

GPL-3

Recipe:

/bioconductor-sechm/meta.yaml

sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.

package bioconductor-sechm

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-complexheatmap >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-circlize

• r-matrixstats

• r-randomcolor

• r-seriation

Required By:

• bioconductor-setools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sechm

and update with:

conda update bioconductor-sechm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sechm:<tag>

(see bioconductor-sechm/tags for valid values for <tag>)

Download stats

Link to this page

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