recipe bioconductor-semdist

Information Accretion-based Function Predictor Evaluation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SemDist.html

License

GPL (>= 2)

Recipe

/bioconductor-semdist/meta.yaml

Links

biotools: semdist, doi: 10.1038/nmeth.3252

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

package bioconductor-semdist

(downloads) docker_bioconductor-semdist

Versions

1.22.0-01.20.0-01.18.0-11.16.0-11.16.0-01.14.0-01.12.0-01.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-semdist

and update with:

conda update bioconductor-semdist

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-semdist:<tag>

(see bioconductor-semdist/tags for valid values for <tag>)