recipe bioconductor-semdist

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SemDist.html

License

GPL (>= 2)

Recipe

/bioconductor-semdist/meta.yaml

Links

biotools: semdist, doi: 10.1038/nmeth.3252

package bioconductor-semdist

(downloads) docker_bioconductor-semdist

Versions

1.16.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-semdist

and update with:

conda update bioconductor-semdist

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-semdist:<tag>

(see bioconductor-semdist/tags for valid values for <tag>)