recipe bioconductor-seqbias

This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/seqbias.html

License

LGPL-3

Recipe

/bioconductor-seqbias/meta.yaml

package bioconductor-seqbias

(downloads) docker_bioconductor-seqbias

Versions

1.30.0-0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqbias

and update with:

conda update bioconductor-seqbias

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqbias:<tag>

(see bioconductor-seqbias/tags for valid values for <tag>)