recipe bioconductor-seqpattern

Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences

Homepage

https://bioconductor.org/packages/3.12/bioc/html/seqPattern.html

License

GPL-3

Recipe

/bioconductor-seqpattern/meta.yaml

Links

biotools: seqpattern, doi: 10.1038/nmeth.3252

Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

package bioconductor-seqpattern

(downloads) docker_bioconductor-seqpattern

Versions
1.22.0-01.20.0-01.18.0-01.16.0-11.14.0-01.12.0-01.10.0-01.8.0-01.6.0-0

1.22.0-01.20.0-01.18.0-01.16.0-11.14.0-01.12.0-01.10.0-01.8.0-01.6.0-01.4.0-01.2.0-11.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqpattern

and update with:

conda update bioconductor-seqpattern

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqpattern:<tag>

(see bioconductor-seqpattern/tags for valid values for <tag>)