recipe bioconductor-seqpattern

Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/seqPattern.html

License

GPL-3

Recipe

/bioconductor-seqpattern/meta.yaml

Links

biotools: seqpattern, doi: 10.1038/nmeth.3252

package bioconductor-seqpattern

(downloads) docker_bioconductor-seqpattern

Versions

1.16.0-1, 1.14.0-0, 1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-1, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqpattern

and update with:

conda update bioconductor-seqpattern

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqpattern:<tag>

(see bioconductor-seqpattern/tags for valid values for <tag>)