recipe bioconductor-seqsqc

A bioconductor package for sample quality check with next generation sequencing data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SeqSQC.html

License:

GPL-3

Recipe:

/bioconductor-seqsqc/meta.yaml

The SeqSQC is designed to identify problematic samples in NGS data, including samples with gender mismatch, contamination, cryptic relatedness, and population outlier.

package bioconductor-seqsqc

(downloads) docker_bioconductor-seqsqc

Versions:

1.20.0-01.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-seqsqc

and update with:

conda update bioconductor-seqsqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqsqc:<tag>

(see bioconductor-seqsqc/tags for valid values for <tag>)

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