recipe bioconductor-seqtools

Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/seqTools.html

License

Artistic-2.0

Recipe

/bioconductor-seqtools/meta.yaml

Links

biotools: seqtools, doi: 10.1038/nmeth.3252

package bioconductor-seqtools

(downloads) docker_bioconductor-seqtools

Versions

1.18.0-0, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends bioconductor-zlibbioc

>=1.30.0,<1.31.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqtools

and update with:

conda update bioconductor-seqtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqtools:<tag>

(see bioconductor-seqtools/tags for valid values for <tag>)