recipe bioconductor-setools

SEtools: tools for working with SummarizedExperiment

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SEtools.html

License:

GPL

Recipe:

/bioconductor-setools/meta.yaml

This includes a set of tools for working with the SummarizedExperiment class, including merging, melting, aggregation functions. Plotting functions historically in this package have been moved to the sechm package.

package bioconductor-setools

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-sechm >=1.6.0,<1.7.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-sva >=3.46.0,<3.47.0

• r-base >=4.2,<4.3.0a0

• r-circlize

• r-data.table

• r-matrix

• r-openxlsx

• r-pheatmap

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-setools

and update with:

conda update bioconductor-setools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-setools:<tag>

(see bioconductor-setools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-setools/README.html)