recipe bioconductor-siggenes

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/siggenes.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-siggenes/meta.yaml

Links:

biotools: siggenes, doi: 10.1186/1471-2105-9-144

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

package bioconductor-siggenes

(downloads) docker_bioconductor-siggenes

versions:
1.80.0-0,  1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.62.0-0, 

1.80.0-0,  1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-0,  1.58.0-1,  1.56.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.46.0-0,  1.44.0-0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends bioconductor-multtest:

>=2.62.0,<2.63.0

depends r-base:

>=4.4,<4.5.0a0

depends r-scrime:

>=1.2.5

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-siggenes

and update with::

   mamba update bioconductor-siggenes

To create a new environment, run:

mamba create --name myenvname bioconductor-siggenes

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-siggenes:<tag>

(see `bioconductor-siggenes/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-siggenes/README.html)