recipe bioconductor-sigsquared

Gene signature generation for functionally validated signaling pathways

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/sigsquared.html

License:

GPL version 3

Recipe:

/bioconductor-sigsquared/meta.yaml

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

package bioconductor-sigsquared

(downloads) docker_bioconductor-sigsquared

Versions:

1.30.0-01.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.14.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sigsquared

and update with:

conda update bioconductor-sigsquared

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sigsquared:<tag>

(see bioconductor-sigsquared/tags for valid values for <tag>)

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