Package Recipe 'bioconductor-simbindprofiles'

recipe bioconductor-simbindprofiles

Similar Binding Profiles

Homepage: https://bioconductor.org/packages/3.11/bioc/html/SimBindProfiles.html
License: GPL-3
Recipe: /bioconductor-simbindprofiles/meta.yaml
Links: biotools: simbindprofiles, doi: 10.1038/nmeth.3252

SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

package bioconductor-simbindprofiles¶

Versions

1.26.0-0, 1.24.0-0, 1.22.0-1, 1.20.0-1, 1.20.0-0, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends

bioconductor-biobase >=2.48.0,<2.49.0
bioconductor-limma >=3.44.0,<3.45.0
bioconductor-ringo >=1.52.0,<1.53.0
r-base >=4.0,<4.1.0a0
r-mclust

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-simbindprofiles

and update with:

conda update bioconductor-simbindprofiles

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simbindprofiles:<tag>

(see bioconductor-simbindprofiles/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-simbindprofiles/README.html)