-
recipe
bioconductor-simbindprofiles
Similar Binding Profiles
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/SimBindProfiles.html
- License
GPL-3
- Recipe
- Links
biotools: simbindprofiles, doi: 10.1038/nmeth.3252
SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.
-
package
bioconductor-simbindprofiles
¶ -
- Versions
1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-limma
>=3.46.0,<3.47.0
bioconductor-ringo
>=1.54.0,<1.55.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-simbindprofiles
and update with:
conda update bioconductor-simbindprofiles
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-simbindprofiles:<tag>
(see bioconductor-simbindprofiles/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-simbindprofiles/README.html)