recipe bioconductor-simbindprofiles

Similar Binding Profiles

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SimBindProfiles.html

License:

GPL-3

Recipe:

/bioconductor-simbindprofiles/meta.yaml

Links:

biotools: simbindprofiles, doi: 10.1038/nmeth.3252

SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

package bioconductor-simbindprofiles

Versions:

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-1, 

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-ringo >=1.62.0,<1.63.0

• r-base >=4.2,<4.3.0a0

• r-mclust

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-simbindprofiles

and update with:

conda update bioconductor-simbindprofiles

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simbindprofiles:<tag>

(see bioconductor-simbindprofiles/tags for valid values for <tag>)

Download stats

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