recipe bioconductor-simd

Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SIMD.html

License:

GPL-3

Recipe:

/bioconductor-simd/meta.yaml

This package provides a inferential analysis method for detecting differentially expressed CpG sites in MeDIP-seq data. It uses statistical framework and EM algorithm, to identify differentially expressed CpG sites. The methods on this package are described in the article 'Methylation-level Inferences and Detection of Differential Methylation with Medip-seq Data' by Yan Zhou, Jiadi Zhu, Mingtao Zhao, Baoxue Zhang, Chunfu Jiang and Xiyan Yang (2018, pending publication).

package bioconductor-simd

(downloads) docker_bioconductor-simd

Versions:
1.16.0-01.12.0-21.12.0-11.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-0

1.16.0-01.12.0-21.12.0-11.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-01.2.0-11.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-simd

and update with:

conda update bioconductor-simd

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simd:<tag>

(see bioconductor-simd/tags for valid values for <tag>)

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