recipe bioconductor-similarpeak

Metrics to estimate a level of similarity between two ChIP-Seq profiles

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/similaRpeak.html

License:

Artistic-2.0

Recipe:

/bioconductor-similarpeak/meta.yaml

Links:

biotools: similarpeak, doi: 10.1371/journal.pcbi.1004751

This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.

package bioconductor-similarpeak

(downloads) docker_bioconductor-similarpeak

Versions:
1.30.0-01.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.16.0-0

1.30.0-01.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-01.10.0-01.8.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-similarpeak

and update with:

conda update bioconductor-similarpeak

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-similarpeak:<tag>

(see bioconductor-similarpeak/tags for valid values for <tag>)

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