recipe bioconductor-slalom

Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/slalom.html

License

GPL-2

Recipe

/bioconductor-slalom/meta.yaml

slalom is a scalable modelling framework for single-cell RNA-seq data that uses gene set annotations to dissect single-cell transcriptome heterogeneity, thereby allowing to identify biological drivers of cell-to-cell variability and model confounding factors.

package bioconductor-slalom

(downloads) docker_bioconductor-slalom

Versions

1.10.0-01.8.0-01.6.0-11.4.1-01.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-slalom

and update with:

conda update bioconductor-slalom

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-slalom:<tag>

(see bioconductor-slalom/tags for valid values for <tag>)