recipe bioconductor-snagee

Signal-to-Noise applied to Gene Expression Experiments

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/SNAGEE.html

License:

Artistic-2.0

Recipe:

/bioconductor-snagee/meta.yaml

Links:

biotools: snagee, doi: 10.1371/journal.pone.0051013

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

package bioconductor-snagee

(downloads) docker_bioconductor-snagee

versions:
1.42.0-0,  1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-2,  1.30.0-0,  1.28.0-0,  1.26.0-1, 

1.42.0-0,  1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-2,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0

depends bioconductor-snageedata:

>=1.38.0,<1.39.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-snagee

and update with::

   mamba update bioconductor-snagee

To create a new environment, run:

mamba create --name myenvname bioconductor-snagee

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-snagee:<tag>

(see `bioconductor-snagee/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-snagee/README.html)