recipe bioconductor-snapcount

R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts

Homepage

https://bioconductor.org/packages/3.11/bioc/html/snapcount.html

License

MIT + file LICENSE

Recipe

/bioconductor-snapcount/meta.yaml

snapcount is a client interface to the Snaptron webservices which support querying by gene name or genomic region. Results include raw expression counts derived from alignment of RNA-seq samples and/or various summarized measures of expression across one or more regions/genes per-sample (e.g. percent spliced in).

package bioconductor-snapcount

(downloads) docker_bioconductor-snapcount

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-snapcount

and update with:

conda update bioconductor-snapcount

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snapcount:<tag>

(see bioconductor-snapcount/tags for valid values for <tag>)