recipe bioconductor-snplocs.hsapiens.dbsnp150.grch38

SNP locations for Homo sapiens (dbSNP Build 150)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/SNPlocs.Hsapiens.dbSNP150.GRCh38.html

License:

Artistic-2.0

Recipe:

/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

package bioconductor-snplocs.hsapiens.dbsnp150.grch38

Versions:

0.99.20-10,  0.99.20-9,  0.99.20-8,  0.99.20-7,  0.99.20-6,  0.99.20-5,  0.99.20-3,  0.99.20-2,  0.99.20-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221103

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-trena

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-snplocs.hsapiens.dbsnp150.grch38

and update with:

conda update bioconductor-snplocs.hsapiens.dbsnp150.grch38

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp150.grch38:<tag>

(see bioconductor-snplocs.hsapiens.dbsnp150.grch38/tags for valid values for <tag>)

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