recipe bioconductor-snpstats

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/snpStats.html

License

GPL-3

Recipe

/bioconductor-snpstats/meta.yaml

Links

biotools: snpstats, doi: 10.1038/nmeth.3252

package bioconductor-snpstats

(downloads) docker_bioconductor-snpstats

Versions

1.32.0-0, 1.30.0-0, 1.28.0-1, 1.28.0-0, 1.26.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-matrix

Depends r-survival

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-snpstats

and update with:

conda update bioconductor-snpstats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snpstats:<tag>

(see bioconductor-snpstats/tags for valid values for <tag>)