recipe bioconductor-spaniel

Spatial Transcriptomics Analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/Spaniel.html

License

MIT + file LICENSE

Recipe

/bioconductor-spaniel/meta.yaml

Spaniel includes a series of tools to aid the quality control and analysis of Spatial Transcriptomics data. The package contains functions to create either a Seurat object or SingleCellExperiment from a count matrix and spatial barcode file and provides a method of loading a histologial image into R. The spanielPlot function allows visualisation of metrics contained within the S4 object overlaid onto the image of the tissue.

package bioconductor-spaniel

(downloads) docker_bioconductor-spaniel

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spaniel

and update with:

conda update bioconductor-spaniel

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spaniel:<tag>

(see bioconductor-spaniel/tags for valid values for <tag>)