recipe bioconductor-sparrow

Take command of set enrichment analyses through a unified interface

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/sparrow.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-sparrow/meta.yaml

Provides a unified interface to a variety of GSEA techniques from different bioconductor packages. Results are harmonized into a single object and can be interrogated uniformly for quick exploration and interpretation of results. Interactive exploration of GSEA results is enabled through a shiny app provided by a sparrow.shiny sibling package.

package bioconductor-sparrow

Versions:

1.4.0-0,  1.0.1-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biocset >=1.12.0,<1.13.0

• bioconductor-complexheatmap >=2.14.0,<2.15.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-limma >=3.54.0,<3.55.0

• r-babelgene >=21.4

• r-base >=4.2,<4.3.0a0

• r-checkmate

• r-circlize

• r-data.table >=1.10.4

• r-ggplot2 >=2.2.0

• r-irlba

• r-matrix

• r-plotly >=4.9.0

• r-viridis

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sparrow

and update with:

conda update bioconductor-sparrow

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sparrow:<tag>

(see bioconductor-sparrow/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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