recipe bioconductor-spatialcpie

Cluster analysis of Spatial Transcriptomics data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SpatialCPie.html

License

MIT + file LICENSE

Recipe

/bioconductor-spatialcpie/meta.yaml

SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationships between clusters in order to guide the user during cluster identification and other downstream applications. The package is built around a shiny "gadget" to allow the exploration of the data with multiple plots in parallel and an interactive UI. The user can easily toggle between different cluster resolutions in order to choose the most appropriate visual cues.

package bioconductor-spatialcpie

(downloads) docker_bioconductor-spatialcpie

Versions

1.4.0-01.2.0-01.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spatialcpie

and update with:

conda update bioconductor-spatialcpie

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spatialcpie:<tag>

(see bioconductor-spatialcpie/tags for valid values for <tag>)