bioconductor-specl

downloads

provides a function for generating spectra libraries which can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software.

Home http://bioconductor.org/packages/3.7/bioc/html/specL.html
Versions 1.14.0, 1.12.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-specl
Links biotools: specl

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-specl

and update with:

conda update bioconductor-specl

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-specl.