bioconductor-spia

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This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.

Home http://bioconductor.org/packages/3.6/bioc/html/SPIA.html
Versions 2.28.0, 2.30.0
License file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-spia

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spia

and update with:

conda update bioconductor-spia

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-spia.