-
recipe
bioconductor-spia
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
- Homepage
- License
file LICENSE
- Recipe
- Links
biotools: spia, doi: 10.1093/bioinformatics/btn577
This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.
-
package
bioconductor-spia
¶ -
- Versions
2.42.0-0
,2.40.0-0
,2.38.0-0
,2.36.0-1
,2.34.0-0
,2.32.0-0
,2.30.0-0
,2.28.0-0
- Depends
bioconductor-kegggraph
>=1.50.0,<1.51.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-spia
and update with:
conda update bioconductor-spia
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spia:<tag>
(see bioconductor-spia/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spia/README.html)