- recipe bioconductor-splatter
Simple Simulation of Single-cell RNA Sequencing Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/splatter.html
- License:
GPL-3 + file LICENSE
- Recipe:
Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.
- package bioconductor-splatter¶
-
- Versions:
1.22.0-0
,1.18.1-0
,1.16.1-0
,1.14.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.22.0-0
,1.18.1-0
,1.16.1-0
,1.14.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.4.3-0
,1.2.1-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scater
>=1.26.0,<1.27.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-checkmate
>=2.0.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-splatter
and update with:
conda update bioconductor-splatter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-splatter:<tag>
(see bioconductor-splatter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-splatter/README.html)