recipe bioconductor-splatter

Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.



GPL-3 + file LICENSE



package bioconductor-splatter

(downloads) docker_bioconductor-splatter


1.6.1-0, 1.4.3-0, 1.2.1-0

Depends bioconductor-biocgenerics


Depends bioconductor-biocparallel


Depends bioconductor-edger


Depends bioconductor-scater


Depends bioconductor-singlecellexperiment


Depends bioconductor-summarizedexperiment


Depends r-akima

Depends r-base


Depends r-checkmate

Depends r-crayon

Depends r-fitdistrplus

Depends r-ggplot2

Depends r-locfit

Depends r-matrixstats

Depends r-scales



With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-splatter

and update with:

conda update bioconductor-splatter

or use the docker container:

docker pull<tag>

(see bioconductor-splatter/tags for valid values for <tag>)