recipe bioconductor-splatter

Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/splatter.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-splatter/meta.yaml

package bioconductor-splatter

(downloads) docker_bioconductor-splatter

Versions

1.6.1-0, 1.4.3-0, 1.2.1-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-scater

>=1.10.0,<1.11.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-akima

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-checkmate

Depends r-crayon

Depends r-fitdistrplus

Depends r-ggplot2

Depends r-locfit

Depends r-matrixstats

Depends r-scales

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-splatter

and update with:

conda update bioconductor-splatter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-splatter:<tag>

(see bioconductor-splatter/tags for valid values for <tag>)