recipe bioconductor-splicinggraphs

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SplicingGraphs.html

License

Artistic-2.0

Recipe

/bioconductor-splicinggraphs/meta.yaml

Links

biotools: splicinggraphs, doi: 10.1093/bioinformatics/18.suppl_1.s181

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

package bioconductor-splicinggraphs

(downloads) docker_bioconductor-splicinggraphs

Versions

1.28.0-01.25.0-01.24.0-11.22.1-01.20.0-01.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-splicinggraphs

and update with:

conda update bioconductor-splicinggraphs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-splicinggraphs:<tag>

(see bioconductor-splicinggraphs/tags for valid values for <tag>)