recipe bioconductor-splicinggraphs

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/SplicingGraphs.html

License:

Artistic-2.0

Recipe:

/bioconductor-splicinggraphs/meta.yaml

Links:

biotools: splicinggraphs, doi: 10.1093/bioinformatics/18.suppl_1.s181

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

package bioconductor-splicinggraphs

(downloads) docker_bioconductor-splicinggraphs

Versions:
1.34.0-01.32.0-01.30.0-11.30.0-01.28.0-01.25.0-01.24.0-11.22.1-01.20.0-0

1.34.0-01.32.0-01.30.0-11.30.0-01.28.0-01.25.0-01.24.0-11.22.1-01.20.0-01.18.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-splicinggraphs

and update with:

conda update bioconductor-splicinggraphs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-splicinggraphs:<tag>

(see bioconductor-splicinggraphs/tags for valid values for <tag>)

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