recipe bioconductor-srnadiff

Differential expression of small RNA-seq when reference annotation is not given.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/srnadiff.html

License

GPL-3

Recipe

/bioconductor-srnadiff/meta.yaml

package bioconductor-srnadiff

Versions

1.4.0-1, 1.2.0-0

Depends

• bioconductor-biocparallel >=1.18.0,<1.19.0

• bioconductor-biocstyle >=2.12.0,<2.13.0

• bioconductor-deseq2 >=1.24.0,<1.25.0

• bioconductor-genomeinfodb >=1.20.0,<1.21.0

• bioconductor-genomicalignments >=1.20.0,<1.21.0

• bioconductor-genomicfeatures >=1.36.0,<1.37.0

• bioconductor-genomicranges >=1.36.0,<1.37.0

• bioconductor-iranges >=2.18.0,<2.19.0

• bioconductor-rsamtools >=2.0.0,<2.1.0

• bioconductor-rtracklayer >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• bioconductor-summarizedexperiment >=1.14.0,<1.15.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-devtools

• r-ggplot2

• r-rcpp >=0.12.8

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-srnadiff

and update with:

conda update bioconductor-srnadiff

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-srnadiff:<tag>

(see bioconductor-srnadiff/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-srnadiff/README.html)