recipe bioconductor-srnadiff

Finding differentially expressed unannotated genomic regions from RNA-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/srnadiff.html

License:

GPL-3

Recipe:

/bioconductor-srnadiff/meta.yaml

srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification. It reads BAM files as input, and outputs a list differentially regions, together with the adjusted p-values.

package bioconductor-srnadiff

(downloads) docker_bioconductor-srnadiff

Versions:
1.18.0-01.14.0-21.14.0-11.14.0-01.12.2-01.11.0-01.10.1-01.10.0-01.8.0-0

1.18.0-01.14.0-21.14.0-11.14.0-01.12.2-01.11.0-01.10.1-01.10.0-01.8.0-01.6.0-01.4.0-11.2.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-srnadiff

and update with:

conda update bioconductor-srnadiff

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-srnadiff:<tag>

(see bioconductor-srnadiff/tags for valid values for <tag>)

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