bioconductor-streamer

downloads

Large data files can be difficult to work with in R, where data generally resides in memory. This package encourages a style of programming where data is ‘streamed’ from disk into R via a `producer’ and through a series of `consumers’ that, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input, sampling, indexing, and transformation; see package?Streamer for details.

Home http://bioconductor.org/packages/3.6/bioc/html/Streamer.html
Versions 1.22.0, 1.24.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-streamer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-streamer

and update with:

conda update bioconductor-streamer

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-streamer.