recipe bioconductor-streamer

Enabling stream processing of large files

Homepage

https://bioconductor.org/packages/3.11/bioc/html/Streamer.html

License

Artistic-2.0

Recipe

/bioconductor-streamer/meta.yaml

Links

biotools: streamer, doi: 10.1038/nmeth.3252

Large data files can be difficult to work with in R, where data generally resides in memory. This package encourages a style of programming where data is ‘streamed’ from disk into R via a `producer’ and through a series of `consumers’ that, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input, sampling, indexing, and transformation; see package?Streamer for details.

package bioconductor-streamer

(downloads) docker_bioconductor-streamer

Versions

1.34.0-0, 1.32.0-0, 1.30.0-1, 1.28.0-0, 1.26.0-0, 1.24.0-0, 1.22.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-streamer

and update with:

conda update bioconductor-streamer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-streamer:<tag>

(see bioconductor-streamer/tags for valid values for <tag>)