recipe bioconductor-switchde

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/switchde.html

License

GPL (>= 2)

Recipe

/bioconductor-switchde/meta.yaml

Links

biotools: switchde, doi: 10.1093/bioinformatics/btw798

package bioconductor-switchde

(downloads) docker_bioconductor-switchde

Versions

1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dplyr

Depends r-ggplot2

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-switchde

and update with:

conda update bioconductor-switchde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-switchde:<tag>

(see bioconductor-switchde/tags for valid values for <tag>)