recipe bioconductor-synaptome.db

Synamptosome Proteome Database

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/synaptome.db.html

License:

Artistic-2.0

Recipe:

/bioconductor-synaptome.db/meta.yaml

The package contains local copy of the Synaptic proteome database. On top of this it provide a set of utility R functions to query and analyse its content. It allows extraction of information for specific genes and building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions.

package bioconductor-synaptome.db

Versions:

0.99.12-0,  0.99.8-1,  0.99.8-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221103

• bioconductor-synaptome.data >=0.99.0,<0.100.0

• curl

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-dbplyr

• r-dplyr

• r-igraph

• r-rdpack

• r-rsqlite

Required By:

• bioconductor-bionar

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-synaptome.db

and update with:

conda update bioconductor-synaptome.db

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-synaptome.db:<tag>

(see bioconductor-synaptome.db/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-synaptome.db/README.html)