recipe bioconductor-synergyfinder

Calculate and Visualize Synergy Scores for Drug Combinations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/synergyfinder.html

License:

Mozilla Public License 2.0

Recipe:

/bioconductor-synergyfinder/meta.yaml

Links:

biotools: synergyfinder, doi: 10.1093/bioinformatics/btx162

Efficient implementations for analyzing pre-clinical multiple drug combination datasets. It provides efficient implementations for 1.the popular synergy scoring models, including HSA, Loewe, Bliss, and ZIP to quantify the degree of drug combination synergy; 2. higher order drug combination data analysis and synergy landscape visualization for unlimited number of drugs in a combination; 3. statistical analysis of drug combination synergy and sensitivity with confidence intervals and p-values; 4. synergy barometer for harmonizing multiple synergy scoring methods to provide a consensus metric of synergy; 5. evaluation of synergy and sensitivity simultaneously to provide an unbiased interpretation of the clinical potential of the drug combinations. Based on this package, we also provide a web application (https://synergyfinderplus.org/) for users who prefer graphical user interface.

package bioconductor-synergyfinder

(downloads) docker_bioconductor-synergyfinder

Versions:
3.6.0-03.2.2-03.0.3-02.4.10-02.4.0-02.2.0-02.0.1-01.10.2-01.10.0-0

3.6.0-03.2.2-03.0.3-02.4.10-02.4.0-02.2.0-02.0.1-01.10.2-01.10.0-01.8.0-01.6.1-01.4.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-synergyfinder

and update with:

conda update bioconductor-synergyfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-synergyfinder:<tag>

(see bioconductor-synergyfinder/tags for valid values for <tag>)

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