recipe bioconductor-tabulamurissenisdata

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/TabulaMurisSenisData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-tabulamurissenisdata/meta.yaml

This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.

package bioconductor-tabulamurissenisdata

Versions:

1.4.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

• r-gdata

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tabulamurissenisdata

and update with:

conda update bioconductor-tabulamurissenisdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tabulamurissenisdata:<tag>

(see bioconductor-tabulamurissenisdata/tags for valid values for <tag>)

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