recipe bioconductor-tfarm

Transcription Factors Association Rules Miner

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/TFARM.html

License:

Artistic-2.0

Recipe:

/bioconductor-tfarm/meta.yaml

It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.

package bioconductor-tfarm

(downloads) docker_bioconductor-tfarm

versions:
1.22.0-01.20.0-01.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-1

1.22.0-01.20.0-01.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.0-0

depends bioconductor-genomicranges:

>=1.52.0,<1.53.0

depends r-arules:

depends r-base:

>=4.3,<4.4.0a0

depends r-fields:

depends r-gplots:

depends r-stringr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tfarm

and update with::

   mamba update bioconductor-tfarm

To create a new environment, run:

mamba create --name myenvname bioconductor-tfarm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-tfarm:<tag>

(see `bioconductor-tfarm/tags`_ for valid values for ``<tag>``)

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