recipe bioconductor-tigre

The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor (TF) protein concentrations from expression measurements of known target genes, or for ranking candidate targets of a TF.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/tigre.html

License

AGPL-3

Recipe

/bioconductor-tigre/meta.yaml

Links

biotools: tigre

package bioconductor-tigre

(downloads) docker_bioconductor-tigre

Versions

1.36.0-0, 1.34.0-0, 1.32.0-0, 1.30.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dbi

Depends r-gplots

Depends r-rsqlite

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tigre

and update with:

conda update bioconductor-tigre

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tigre:<tag>

(see bioconductor-tigre/tags for valid values for <tag>)