bioconductor-tigre

downloads

The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor (TF) protein concentrations from expression measurements of known target genes, or for ranking candidate targets of a TF.

Home http://bioconductor.org/packages/3.6/bioc/html/tigre.html
Versions 1.30.0, 1.32.0
License AGPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tigre

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tigre

and update with:

conda update bioconductor-tigre

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-tigre.