recipe bioconductor-tilingarray

Transcript mapping with high-density oligonucleotide tiling arrays






The package provides functionality that can be useful for the analysis of high-density tiling microarray data (such as from Affymetrix genechips) for measuring transcript abundance and architecture. The main functionalities of the package are: 1. the class ‘segmentation’ for representing partitionings of a linear series of data; 2. the function ‘segment’ for fitting piecewise constant models using a dynamic programming algorithm that is both fast and exact; 3. the function ‘confint’ for calculating confidence intervals using the strucchange package; 4. the function ‘plotAlongChrom’ for generating pretty plots; 5. the function ‘normalizeByReference’ for probe-sequence dependent response adjustment from a (set of) reference hybridizations.

package bioconductor-tilingarray

(downloads) docker_bioconductor-tilingarray


1.66.0-0, 1.64.0-0, 1.62.0-1, 1.60.0-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tilingarray

and update with:

conda update bioconductor-tilingarray

or use the docker container:

docker pull<tag>

(see bioconductor-tilingarray/tags for valid values for <tag>)