recipe bioconductor-trackviewer

A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/trackViewer.html

License:

GPL (>= 2)

Recipe:

/bioconductor-trackviewer/meta.yaml

Links:

biotools: trackviewer, doi: 10.1038/nmeth.3252

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

package bioconductor-trackviewer

Versions:

1.34.0-0,  1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.2-0,  1.26.0-0,  1.24.0-0,  1.22.0-0, 

1.34.0-0,  1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.2-0,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.5-0,  1.18.0-1,  1.18.0-0,  1.16.1-0,  1.14.1-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-interactionset >=1.26.0,<1.27.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rgraphviz >=2.42.0,<2.43.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-grimport

• r-htmlwidgets

• r-plotrix

• r-rcpp

• r-scales

Required By:

• bioconductor-nadfinder

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-trackviewer

and update with:

conda update bioconductor-trackviewer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trackviewer:<tag>

(see bioconductor-trackviewer/tags for valid values for <tag>)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-trackviewer/README.html)