- recipe bioconductor-trackviewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/trackViewer.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: trackviewer, doi: 10.1038/nmeth.3252
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
- package bioconductor-trackviewer¶
-
- Versions:
1.34.0-0
,1.30.0-2
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.2-0
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.34.0-0
,1.30.0-2
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.2-0
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.5-0
,1.18.0-1
,1.18.0-0
,1.16.1-0
,1.14.1-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-graph
>=1.76.0,<1.77.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-interactionset
>=1.26.0,<1.27.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rgraphviz
>=2.42.0,<2.43.0
bioconductor-rhdf5
>=2.42.0,<2.43.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-trackviewer
and update with:
conda update bioconductor-trackviewer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-trackviewer:<tag>
(see bioconductor-trackviewer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-trackviewer/README.html)