recipe bioconductor-transview

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/TransView.html

License

GPL-3

Recipe

/bioconductor-transview/meta.yaml

Links

biotools: transview, doi: 10.1038/nmeth.3252

package bioconductor-transview

(downloads) docker_bioconductor-transview

Versions

1.26.0-0, 1.24.0-0, 1.22.0-0, 1.20.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-gplots

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-transview

and update with:

conda update bioconductor-transview

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-transview:<tag>

(see bioconductor-transview/tags for valid values for <tag>)