- recipe bioconductor-traviz
Trajectory functions for visualization and interpretation.
MIT + file LICENSE
traviz provides a suite of functions to plot trajectory related objects from Bioconductor packages. It allows plotting trajectories in reduced dimension, as well as averge gene expression smoothers as a function of pseudotime. Asides from general utility functions, traviz also allows plotting trajectories estimated by Slingshot, as well as smoothers estimated by tradeSeq. Furthermore, it allows for visualization of Slingshot trajectories using ggplot2.
- package bioconductor-traviz¶
- Required By
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-traviz
and update with:
conda update bioconductor-traviz
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-traviz:<tag>
(see bioconductor-traviz/tags for valid values for