recipe bioconductor-treesummarizedexperiment

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

Homepage

https://bioconductor.org/packages/3.13/bioc/html/TreeSummarizedExperiment.html

License

GPL (>=2)

Recipe

/bioconductor-treesummarizedexperiment/meta.yaml

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.

package bioconductor-treesummarizedexperiment

Versions

2.0.0-0,  1.6.2-0,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.3-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biocparallel >=1.26.0,<1.27.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-singlecellexperiment >=1.14.0,<1.15.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• r-ape

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-rlang

Required By

• bioconductor-miaviz

• bioconductor-mia

• bioconductor-experimentsubset

• bioconductor-curatedmetagenomicdata

• bioconductor-microbiomedatasets

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-treesummarizedexperiment

and update with:

conda update bioconductor-treesummarizedexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-treesummarizedexperiment:<tag>

(see bioconductor-treesummarizedexperiment/tags for valid values for <tag>)

Download stats

Link to this page

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