- recipe bioconductor-trena
Fit transcriptional regulatory networks using gene expression, priors, machine learning
- Homepage:
- License:
GPL-3
- Recipe:
Methods for reconstructing transcriptional regulatory networks, especially in species for which genome-wide TF binding site information is available.
- package bioconductor-trena¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.14.0-0
,1.11.6-0
,1.8.0-0
,1.6.1-0
,1.4.2-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biomart
>=2.54.0,<2.55.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-bsgenome.hsapiens.ucsc.hg19
>=1.4.0,<1.5.0
bioconductor-bsgenome.hsapiens.ucsc.hg38
>=1.4.0,<1.5.0
bioconductor-bsgenome.mmusculus.ucsc.mm10
>=1.4.0,<1.5.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-motifdb
>=1.40.0,<1.41.0
bioconductor-org.hs.eg.db
>=3.16.0,<3.17.0
bioconductor-snplocs.hsapiens.dbsnp150.grch38
>=0.99.0,<0.100.0
r-base
>=4.2,<4.3.0a0
r-glmnet
>=2.0.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-trena
and update with:
conda update bioconductor-trena
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-trena:<tag>
(see bioconductor-trena/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-trena/README.html)