recipe bioconductor-tximport

Import and summarize transcript-level estimates for transcript- and gene-level analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/tximport.html

License

GPL (>=2)

Recipe

/bioconductor-tximport/meta.yaml

Links

biotools: tximport

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

package bioconductor-tximport

(downloads) docker_bioconductor-tximport

Versions
1.16.0-01.14.0-01.12.3-01.12.1-11.12.1-01.12.0-01.10.1-01.10.0-01.8.0-0

1.16.0-01.14.0-01.12.3-01.12.1-11.12.1-01.12.0-01.10.1-01.10.0-01.8.0-01.6.0-01.4.0-01.0.3-11.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tximport

and update with:

conda update bioconductor-tximport

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tximport:<tag>

(see bioconductor-tximport/tags for valid values for <tag>)