recipe bioconductor-tximport

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/tximport.html
License:GPL (>=2)
Recipe:/bioconductor-tximport/meta.yaml
Links:biotools: tximport
package bioconductor-tximport

(downloads) docker_bioconductor-tximport

Versions:

1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.0.3-1, 1.0.3-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tximport

and update with:

conda update bioconductor-tximport

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tximport:<tag>

(see bioconductor-tximport/tags for valid values for <tag>)