recipe bioconductor-ularcirc

Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Ularcirc.html

License:

file LICENSE

Recipe:

/bioconductor-ularcirc/meta.yaml

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

package bioconductor-ularcirc

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-mirbase.db >=1.2.0,<1.3.0

• bioconductor-organism.dplyr >=1.26.0,<1.27.0

• bioconductor-plotgardener >=1.4.0,<1.5.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-data.table >=1.9.4

• r-dt

• r-ggplot2

• r-ggrepel

• r-gsubfn

• r-moments

• r-r.utils

• r-shiny

• r-shinydashboard

• r-shinyfiles

• r-shinyjs

• r-yaml

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ularcirc

and update with:

conda update bioconductor-ularcirc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ularcirc:<tag>

(see bioconductor-ularcirc/tags for valid values for <tag>)

Download stats

Link to this page

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