recipe bioconductor-variancepartition

Quantify and interpret divers of variation in multilevel gene expression experiments

Homepage

https://bioconductor.org/packages/3.10/bioc/html/variancePartition.html

License

GPL (>= 2)

Recipe

/bioconductor-variancepartition/meta.yaml

Links

biotools: variancepartition

Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses a linear mixed model to quantify variation in gene expression attributable to individual, tissue, time point, or technical variables. Includes dream differential expression analysis for repeated measures.

package bioconductor-variancepartition

(downloads) docker_bioconductor-variancepartition

Versions

1.16.0-0, 1.14.1-0, 1.14.0-1, 1.12.3-0, 1.12.0-0, 1.10.4-0, 1.8.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-variancepartition

and update with:

conda update bioconductor-variancepartition

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-variancepartition:<tag>

(see bioconductor-variancepartition/tags for valid values for <tag>)