recipe bioconductor-variantannotation

Annotate variants, compute amino acid coding changes, predict coding outcomes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/VariantAnnotation.html

License

Artistic-2.0

Recipe

/bioconductor-variantannotation/meta.yaml

Links

biotools: variantannotation

package bioconductor-variantannotation

(downloads) docker_bioconductor-variantannotation

Versions

1.28.3-0, 1.26.1-0, 1.24.1-0, 1.22.3-0, 1.20.3-0, 1.18.7-0, 1.16.4-0, 1.16.3-0, 1.16.1-0, 1.16.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-bsgenome

>=1.50.0,<1.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dbi

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-variantannotation

and update with:

conda update bioconductor-variantannotation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-variantannotation:<tag>

(see bioconductor-variantannotation/tags for valid values for <tag>)