recipe bioconductor-vidger

Create rapid visualizations of RNAseq data in R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/vidger.html

License:

GPL-3 | file LICENSE

Recipe:

/bioconductor-vidger/meta.yaml

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

package bioconductor-vidger

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggally

• r-ggplot2

• r-ggrepel

• r-knitr

• r-rcolorbrewer

• r-rmarkdown

• r-scales

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-vidger

and update with:

conda update bioconductor-vidger

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vidger:<tag>

(see bioconductor-vidger/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-vidger/README.html)