recipe bioconductor-waddr

Statistical tests for detecting differential distributions based on the 2-Wasserstein distance

Homepage

https://bioconductor.org/packages/3.12/bioc/html/waddR.html

License

MIT + file LICENSE

Recipe

/bioconductor-waddr/meta.yaml

The package offers statistical tests based on the 2-Wasserstein distance for detecting and characterizing differences between two distributions given in the form of samples. Functions for calculating the 2-Wasserstein distance and testing for differential distributions are provided, as welll as specifically tailored test for differential expression in single-cell RNA sequencing data.

package bioconductor-waddr

Versions

1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocfilecache >=1.14.0,<1.15.0

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-singlecellexperiment >=1.12.0,<1.13.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=7.5.0

• r-arm >=1.10-1

• r-base >=4.0,<4.1.0a0

• r-rcpp >=1.0.1

• r-rcpparmadillo

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-waddr

and update with:

conda update bioconductor-waddr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-waddr:<tag>

(see bioconductor-waddr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-waddr/README.html)